Journal of Shanghai University(Natural Science Edition)

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DτLAlgorithm in Chemically Reacting System with Delays

PENG Xin-jun,WANG Yi-fei   

  1. College of Sciences, Shanghai University, Shanghai 200444, China
  • Received:2007-05-09 Revised:1900-01-01 Online:2008-08-27 Published:2008-08-27
  • Contact: WANG Yi-fei

Abstract: The recently proposed delay stochastic simulation algorithm (DSSA) is an exact but inefficient simulation method for numerically simulating the stochastic dynamics of chemically reacting systems with delays. Presented here is a delay τ leaping (DτL) method, which is an accelerated method for simulating chemically reacting systems with delays. In this method the leap time is calculated from the leap condition, and the number of reactions occurring of each channel during τ is randomly determined according to its approximated probability density function. This approach can accelerate simulation with acceptable simulation accuracy. Numerical experiments show that the DτL algorithm has good performance for simulating chemically reacting systems with delay.

Key words: DτL algorithm, stochastic simulation algorithm, chemically reacting system with delays

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