上海大学学报(自然科学版) ›› 2023, Vol. 29 ›› Issue (2): 277-.doi: 10.12066/j.issn.1007-2861.2447

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含氢空位氢化金刚石 2 维原子晶体体系与硫酸吲哚酚和水分子相互作用的第一性原理计算

耿俊杰1, 张兆春1, 鄢奇桢1, 郭海波1, 王 洋2   

  1. 1. 上海大学 材料科学与工程学院, 上海 200444; 2. 上海大学 计算机工程与科学学院, 上海 200444
  • 出版日期:2023-04-30 发布日期:2023-04-30
  • 通讯作者: 张兆春(1963—), 男, 副教授, 博士, 研究方向为材料物理化学. E-mail: zhangzhaochun@shu.edu.cn

First-principles study on interactions between hydrogenated two-dimensional atomic diamonds with hydrogen vacancy and indoxyl sulfate and water molecules

GENG Junjie1, ZHANG Zhaochun1, YAN Qizhen1, GUO Haibo1, WANG Yang2   

  1. 1. School of Materials Science and Engineering, Shanghai University, Shanghai 200444, China; 2. School of Computer Engineering and Science, Shanghai University, Shanghai 200444, China
  • Online:2023-04-30 Published:2023-04-30

摘要: 基于立方金刚石晶体结构构建了 2 种 2 维原子晶体: 氢化立方金刚石 (hydrogenated cubic diamond, HCD) 和含氢空位氢化立方金刚石 (hydrogen vacancy-HCD, Hv-HCD); 将含氢空位氢化立方金刚石与单层六方氮化硼 (h-BN) 和石墨烯 (graphene, G) 组装构建了 2种 2 维原子晶体范德华异质结构: h-BN/Hv-HCD 和 G/Hv-HCD. 根据第一性原理, 对含氢空位氢化立方金刚石 2 维原子晶体体系、硫酸吲哚酚和水分子的 Fukui 函数进行了计算. 研究结果显示, 含氢空位氢化立方金刚石 2 维原子晶体体系的氢空位碳原子具有较大的 f+(r)和 f−(r) 值, 表明氢空位碳原子的亲电和亲核反应趋势较为显著. 有关能量效应的计算结果表明: 水分子与含氢空位氢化立方金刚石2 维原子晶体体系的氢空位碳原子形成氢键; 硫酸吲哚酚分子在氢空位碳原子位点发生化学分解, 生成 3-吲哚酮和二氧化硫, 原磺酸基羟基与氢空位碳原子结合形成醇羟基. 该体系可以作为基于2 维原子晶体研发生物活性分子、人体血液毒素分子吸附清除以及检测分析核心材料的参考依据.

关键词: 氢空位, 2 维原子晶体, 硫酸吲哚酚, 水分子, Fukui 函数

Abstract: The aim of this study was to construct hydrogenated two-dimensional cu-bic atomic diamonds with hydrogen vacancy-hydrogenated cubic diamond (Hv-HCD) and without hydrogen vacancy (HCD). Furthermore, the isolated monolayer of hexagonal boron nitride (h-BN) or graphene (G) and Hv-HCD were reassembled into van de Waals het-erostructures, h-BN/Hv-HCD, and G/Hv-HCD. Based on first-principles, the Fukui func-tions of water, indoxyl sulfate, and the constructed hydrogenated two-dimensional cubic atomic diamonds with hydrogen vacancy were calculated. The largest values of f+(r) and f−(r) lie around the carbon atom close to the hydrogen vacancy, implying that the carbon atom was the nucleophilic and electrophilic reactive site. The results indicate that a water molecule forms a hydrogen bond with the carbon atom close to the hydrogen vacancy of the hydrogenated two-dimensional atomic diamonds with hydrogen vacancy. The indoxyl phosphate molecule is degraded into 3-indolone and sulfur dioxide at the carbon atom close to the hydrogen vacancy site. The hydroxyl in the sulfonic group forms an alcoholic hy-droxyl with the carbon atom close to the hydrogen vacancy. The phenomena described here could provide a foundation for investigating the essential materials for the development of bioactive or human blood toxic molecule sensors based on two-dimensional atomic crystals.

Key words: hydrogen vacancy, two-dimensional atomic crystal, indoxyl sulfate, water molecule, Fukui function

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